Importing OpenClinica Data Into R

R is a powerful open source statistical software package–many people think of it as an open source alternative to SAS. A number of OpenClinica users have been asking about how to bring data from OpenClinica into R. So, we recently published a write-up in the OpenClinica reference guide, providing instructions for importing data into R in three different ways:

  •     using a Tab-delimited file,
  •     using a CSV file, and
  •     using an Excel file.

Feedback and additional ideas are welcome.

– Ben Baumann

OC13: Early Bird Registration Ends Friday, March 22!

Friday, March 22 is your last chance to get early bird registration for OC13! Take advantage of this final opportunity to obtain discounted pricing on conference admission, workshops and training.

We have a superb line-up of useful content this year, including a new series of in-depth workshops taught by subject matter experts:

  • Moving from paper to EDC
  • Advanced Edit Checks and Rules
  • Operating OpenClinica in a Regulatory Compliant Environment
  • OpenClinica Web Services & Enabling Modularity
  • Orientation of OpenClinica Code Base
  • Installing and Administering OpenClinica

OC13 also coincides with this year’s DIA annual meeting, so now you have TWO great reasons to come to Boston this June.

Does EDC Help or Hurt Site Relations?

Getting reluctant clinical research sites to embrace technology such as electronic data capture (EDC) software can be difficult. This is a recipe for troubled relationships between the sponsor/CRO and sites. However, just as it is possible for a poor EDC implementation to erode sponsor-site relations, it is also possible for the EDC software to help cultivate improved relationships. Take a look at the new whitepaper, “Improving Site Relationships through EDC” to learn about some important considerations when thinking about site relations in the context of EDC.

OpenClinica 3.1.3 Now Available

We are thrilled to announce the general availability OpenClinica 3.1.3. This latest release of the OpenClinica clinical trial software provides over 100 fixes and enhancements, including:

  • Improved performance and stability, including 80% increase in max user load and 40% faster page turn times
  • Numerous improvements to OpenClinica’s internationalization/localization support
  • Support for CRF version migration of individual event CRFs
  • Enhanced security with strong password configuration options
  • Greater reliability when entering or editing data in repeating groups
  • Ability to run rules at data import and when loading data via web services
  • Fixes to nested simple conditional displays in CRFs

For a more complete overview, you may view the 3.1.3 release notes.

Download OpenClinica 3.1.3 Community Edition

2013 Training Schedule

We have recently posted the 2013 schedule for open enrollment Central User Training at:

https://www.openclinica.com/open-enrollment-training

Central User Training is an intensive, comprehensive 4-day course that teaches students how to use the application from the perspective of all user types.

Open enrollment courses are open to any person who is interested in attending, and is appropriate for both users of the Community Edition and Enterprise Edition.

We also regularly organize private classes as needed.

OpenClinica 3.1.3 Release Preview; Beta Now Available

We’ve been working hard on the OpenClinica 3.1.3 release and recently published a beta release. While 3.1.3 is technically a maintenance release, it is quite substantial, covering 176 fixes and enhancements. The following is a summary of what’s included. For a more complete and detailed list, please view the Project Roadmap page in the Issue Tracker (login required).

  • Improved performance for CRF data entry/editing, the View Study Subject page, and the Notes and Discrepancies page
  • Fixes and improvements to SPSS output format
  • Improved server stability
  • An overhaul of OpenClinica’s internationalization/localization support to fix defects and increase ease of use.
  • Fixes to problems with data entry/editing in repeating groups
  • Support CRF Version migration for individual event CRFs
  • Rules can be run at data import and when loading data via web services
  • Fixes to nested simple conditional displays in CRFs
  • Option to require strong passwords
  • Fixes to missing database constraints for OpenClinica installations upgraded from 2.5 or earlier

OpenClinica Web Services Tutorial Videos

OpenClinica’s web services layer provides a powerful mechanism for programmatic data interchange between OpenClinica and other systems. Below are the first two videos in a series of tutorials on working with web services. The videos are created by Hiro Honshuku, including the background music! Thanks Hiro!





OpenClinica Exhibiting at DIA China Conference (May 20-23, Shanghai)

OpenClinica is exhibiting at the Drug Information Association’s 4th Annual China Meeting, May 20-23 at the Shanghai International Convention Center.

The environment for clinical research is rapidly evolving in China. This theme of this year’s event is “collaboration and innovation in China.” Sessions features numerous topics related to China and global pharmaceuticals.

Stop by the OpenClinica booth to learn about how OpenClinica is leading the way for modern, more effective clinical research in China.

OpenClinica at Society for Clinical Trials Annual Meeting (May 20-23, Miami)

OpenClinica will be both exhibiting and presenting at this year’s Society for Clinical Trials Annual Meeting, May 20-23 in Miami. Come by the OpenClinica booth to introduce yourself and learn about the many exciting things happening within the OpenClinica software and community! On Wednesday, May 23, OpenClinica’s, CEO, Cal Collins, will lead a presentation showcasing an innovative new OpenClinica mobile data capture technology. The session is titled “Electronic Patient Reported Data for Risk Screening in Primary Care Clinics using OpenClinica and CDISC ODM.”

OpenClinica Conference Showcases Innovation

Innovation in the OpenClinica community occurs on many different levels and in many places around the world. The 2012 OpenClinica Conference earlier this week brought together a diverse group of clinical and IT professionals to share first-hand a lot of the innovative, cutting-edge work being done within our community. Mobile, compliance, best practices, SAS, were all key themes at this year’s event. I was very encouraged by the growing enthusiasm for OpenClinica, and came a way more excited than ever about our collective ability to positively transform clinical research.

Here are some photos on Facebook: http://www.facebook.com/pages/2012-OpenClinica-Conference/228070113945322

Thanks to everyone for helping to make the 2012 OpenClinica Conference the best yet!

– Ben Baumann